| 1999-2000 NISCA Boys Independent High School Academic All-America | ||||
| Athlete | School | City | State | |
| Jon | Allen | Elder High School | Cincinnati | OH |
| Hugo | Aparicio | Lexington Catholic High School | Lexington | KY |
| David | Arnolds | The Latin School of Chicago | Chicago | IL |
| Dennis | Barrett | Christian Brothers Academy | Lincroft | NJ |
| Luke | Bartlinski | Bishop Hoban High School | Wilkes-Barre | PA |
| Brandon | Beck | Albuquerque Academy | Albuquerque | NM |
| George | Bruce | Trinity Academy | Wichita | KS |
| Richard | Burns | Saint Xavier High School | Cincinnati | OH |
| Douglas P. | Campbell | Bellarmine College Preparatory | San Jose | CA |
| Edmund | Caulfield | Saint Peters Preparatory School | Jersey City | NJ |
| Christopher | Coble | Ballarmine College Preparatory | San Jose | CA |
| Andrew | Cornett | Elder High School | Cincinnati | OH |
| Beth | Cox | Lexington Catholic High School | Lexington | KY |
| Derek | Dalton | Regis Jesuit High School | Aurora | CO |
| Jay | Deimel | Cathedral Preparatory School | Erie | PA |
| Brian | Dillard | St. Charles Preparatory School | Columbus | OH |
| Mike | Doyle | Cathedral Preparatory School | Erie | PA |
| Ryan | Duryea | Albuquerque Academy | Albuquerque | NM |
| Marcus | Eliason | Berkeley Preparatory School | Tampa | FL |
| Ryan | Farrell | Seton Hall Preparatory School | West Orange | NJ |
| Morgan | Friel | Junipero Serra High School | San Mateo | CA |
| William | Gillen | Xaverian High School | Brooklyn | NY |
| Douglas | Hausladen | Saint Xavier High School | Cincinnati | OH |
| Shon | Hedges | Polytechnic School | Pasadena | CA |
| Paul | Hersh | Isidore Newman School | New Orleans | LA |
| Mark | Hessler | Bellarmine College Preparatory | San Jose | CA |
| Kevin | Huey | La Salle High School | Cincinnati | OH |
| Matthew | Hulswit | Catholic Central High School | Grand Rapids | MI |
| Brian | Kissinger | Catholic Central High School | Steubenville | OH |
| Myuran | Kulathungam | Gilman School | Baltimore | MD |
| Gregory | Lestikow | Regis Jesuit High School | Aurora | CO |
| David | Lippin | Brophy College Preparatory | Phoenix | AZ |
| Howard | Liu | Archbishop Molloy High School | Briarwood | NY |
| Preston | Lloyd, Jr | Norfolk Academy | Norfolk | VA |
| Ross | Loomis | Maclay School | Tallahassee | FL |
| Anthony | Manza | Xaverian High School | Brooklyn | NY |
| Daniel | McKenna | William Penn Charter School | Philadelphia | PA |
| Matthew | Mergy | Saint Xavier High School | Cincinnati | OH |
| Christian | Milz | Bishop Hoban High School | Wilkes-Barre | PA |
| Ryan | Mooney | Holy Spirit High School | Absecon | NJ |
| Kenli | Okada | Albuquerque Academy | Albuquerque | NM |
| Ryder | Riess | Berkeley Preparatory School | Tampa | FL |
| Nicholas | Rossi | Central Catholic High School | Reading | PA |
| Dennis | Schmidt | Cathedral Preparatory School | Erie | PA |
| Edward | Scott | Westminster School | Simsburg | CT |
| John | Sengenberger | Catholic Central High School | Steubenville | OH |
| Michael | Sullivan | Holy Cross High School | Delran | NJ |
| Robert | Tucker | The Linsly School | Wheeling | WV |
| Spencer | Tuell | Maclay School | Tallahassee | FL |
| Luke | Wagner | Regis Jesuit High School | Aurora | CO |
| Brady | Walker | Albuquerque Academy | Albuquerque | NM |
| Marcus | Wang | Gilman School | Baltimore | MD |
| Mark | Winchester | Marist School | Atlanta | GA |
| Peter | Wittmann | Cathedral Preparatory School | Erie | PA |
| Chester | Yarbrough | St. Andrew's Episcopal School | Ridgeland | MS |
| Jeffrey | Yellin | Isidore Newman School | New Orleans | LA |
| Chris | Zahner | Maclay School | Tallahassee | FL |